gephi - Neo4j server timeout -

i having issues running neo4j on system. running on windows machine windows 8. working great me, when run neo4j.bat in bin folder appears timeout. below error in logs, posted end of log because reached limit on post. did check setting refers , set true, i'm not sure setting does.

also not entirely clear on best way shutdown server once running in mode. have been using ctrl+c on java process runs, don't think correct. best way this?

i should mention using server development environment. setting production database on linux server running okay of now.

2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: system.properties: 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: sun.boot.library.path = c:\program files\java\jdk1.7.0_45\jre\bin 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: org.neo4j.server.properties = conf/neo4j-server.properties 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: path.separator = ; 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: file.encoding.pkg = sun.io 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: user.country = ca 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: user.script = 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: sun.java.launcher = sun_standard 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: sun.os.patch.level = 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: user.dir = c:\users\phil\desktop\neo4j-~1.3 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: user.variant = 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: log4j.configuration = file:conf/log4j.properties 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: sun.jnu.encoding = cp1252 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: sun.management.compiler = hotspot 64-bit tiered compilers 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: user.home = c:\users\phil 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: user.timezone = america/new_york 2014-06-27 19:57:34.679+0000 info [o.n.k.i.diagnosticsmanager]: file.encoding = cp1252 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: user.name = phil 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: sun.java.command = org.neo4j.server.bootstrapper 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: sun.arch.data.model = 64 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: user.language = en 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: awt.toolkit = sun.awt.windows.wtoolkit 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: file.separator = \ 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: sun.io.unicode.encoding = unicodelittle 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: sun.cpu.endian = little 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: sun.desktop = windows 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: sun.cpu.isalist = amd64 2014-06-27 19:57:34.680+0000 info [o.n.k.i.diagnosticsmanager]: network information: 2014-06-27 19:57:34.740+0000 info [o.n.k.i.diagnosticsmanager]: interface software loopback interface 1: 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]:
address: 127.0.0.1 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: address: 0:0:0:0:0:0:0:1 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft kernel debug network adapter: 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260: 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: address: 192.168.7.3 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: address: fe80:0:0:0:e0c1:1110:ab0d:e5cd%3 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: interface teredo tunneling pseudo-interface: 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft wi-fi direct virtual adapter: 2014-06-27 19:57:34.741+0000 info [o.n.k.i.diagnosticsmanager]: address: fe80:0:0:0:b59e:733f:c692:3e78%5 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft wi-fi direct virtual adapter #2: 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: interface bluetooth device (personal area network): 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: address: fe80:0:0:0:e133:a93a:40ff:bce6%7 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: interface bluetooth device (rfcomm protocol tdi): 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft isatap adapter #4: 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]:
address: fe80:0:0:0:0:5efe:c0a8:3801%9 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260 - virtualbox bridged networking driver miniport: 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: interface virtualbox host-only ethernet adapter: 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: address: 192.168.56.1 2014-06-27 19:57:34.742+0000 info [o.n.k.i.diagnosticsmanager]: address: fe80:0:0:0:e570:3571:e120:df83%11 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft isatap adapter #3: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]:
address: fe80:0:0:0:0:5efe:c0a8:703%12 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft isatap adapter

7: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft isatap adapter: 2014-06-27 19:57:34.743+0000 info

[o.n.k.i.diagnosticsmanager]: interface microsoft isatap adapter #2: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft isatap adapter #5: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface virtualbox host-only ethernet adapter-wfp native mac layer lightweight filter-0000: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface virtualbox host-only ethernet adapter-qos packet scheduler-0000: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface virtualbox host-only ethernet adapter-wfp 802.3 mac layer lightweight filter-0000: 2014-06-27 19:57:34.743+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260-wfp native mac layer lightweight filter-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260-virtual wifi filter driver-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260-native wifi filter driver-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260 - virtualbox bridged networking driver miniport-qos packet scheduler-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface intel(r) dual band wireless-n 7260 - virtualbox bridged networking driver miniport-wfp 802.3 mac layer lightweight filter-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft wi-fi direct virtual adapter-wfp native mac layer lightweight filter-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft wi-fi direct virtual adapter-native wifi filter driver-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft wi-fi direct virtual adapter-qos packet scheduler-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: interface microsoft wi-fi direct virtual adapter-wfp 802.3 mac layer lightweight filter-0000: 2014-06-27 19:57:34.744+0000 info [o.n.k.i.diagnosticsmanager]: --- initialized diagnostics end --- 2014-06-27 19:57:34.881+0000 info [o.n.k.i.diagnosticsmanager]: --- stopping diagnostics start --- 2014-06-27 19:57:34.881+0000 info [o.n.k.i.diagnosticsmanager]: --- stopping diagnostics end --- 2014-06-27 19:57:34.882+0000 error [o.n.k.embeddedgraphdatabase]: startup failed: component 'org.neo4j.kernel.impl.transaction.xadatasourcemanager@3aefb8cf' initialized, failed start. please see attached cause exception.: component 'org.neo4j.kernel.impl.nioneo.xa.neostorexadatasource@5a232b4c' initialized, failed start. please see attached cause exception.: failed start neo4j older data store version. enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true" 2014-06-27 19:57:34.882+0000 info [o.n.k.embeddedgraphdatabase]: shutdown started

the gephi neo4j plugin updated 2.1.2 , update store when opens it.

so either use gephi on copy of store, or upgrade sever 2.1.2